rs10840184 chr11:9166139 T>C

Sequence
tgtcgccaggctggagtgcagtgg[T/C]gtgatctcagctcgctgcaacctc
ASB in cell types
K562 (myelogenous leukemia) gastroesophageal sphincter thoracic aorta
ASB for transcription factors
CTCF_HUMAN KAISO_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.97 0.78 4.4·10-41.00 1.16 n/a No Hit
KAISO_HUMAN n/a 1.30 1.005.2·10-3 2.00 n/a No Hit
STAG1_HUMAN 0.42 -0.01 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

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