rs10840218 chr11:9364651 C>G
- Sequence
tcccgacgttgcaatccccgccag[C/G]tcggcgggggccgcacggggctgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) U87 (glioblastoma) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ZN592_HUMAN E2F1_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN592_HUMAN | n/a | 3.00 | 1.00 | n/a | n/a | |||
| E2F1_HUMAN | 2.56 | 0.54 | 1.50 | -0.75 | Weak Concordant | |||
| TYY1_HUMAN | n/a | 2.82 | 3.00 | -0.94 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Testis