rs10840243 chr11:9461946 A>G
- Sequence
aatcagctgatataatcaagtgag[A/G]atgtggggagaaattgtaggttcg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia) primary human Th1 T cells Th1-cells
- ASB for transcription factors
- SPI1_HUMAN STAT3_HUMAN ETS1_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.33 | 2.47 | 1.50 | 4.67 | Concordant | |||
| STAT3_HUMAN | -2.61 | 2.69 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | -2.56 | 2.35 | 1.00 | 4.40 | Concordant | |||
| FLI1_HUMAN | n/a | 2.31 | 1.00 | 4.04 | Concordant | |||
| SMCA4_HUMAN | 0.61 | 1.41 | 1.23 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GRASP body mass index (bmi), comorbid depressive syndrome and alcohol dependence, hdl cholesterol, total cholesterol
GTEx eQTL Artery_Aorta, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg