rs10842598 chr12:8950329 A>C
- Sequence
tttgcttgataagcatgctctgca[A/C]ccacctctgttcgccagaggttac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN RBBP5_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.25 | 1.73 | 1.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.67 | n/a | 3.00 | n/a | n/a | |||
| ANDR_HUMAN | 1.98 | -1.08 | 2.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid