rs10842809 chr12:26869939 G>A

Sequence
agcctcagttcagatcctggttct[G/A]ccacttcccagctccttgaatgtg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN 0.61 1.88 1.000.04 1.38 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP alcohol consumption,  hdl cholesterol change with statins,  height,  hypertension (early onset hypertension),  ldl cholesterol,  microalbuminuria,  parkinsons disease,  premature ovarian failure,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24

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