rs10842810 chr12:26869993 C>G

Sequence
atggctcagcctctctgtgcctca[C/G]ttccttcatgggctgattattctc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN 2.14 0.16 7.9·10-41.00 1.38 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins,  ldl cholesterol,  mitral annular calcium,  parkinsons disease
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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