rs10842978 chr12:27772744 G>C

Sequence
atctgtttgaagggatagggaaga[G/C]aggttttataatggcaaaggaagg
ASB in cell types
SYO-1(Biphasic synovial sarcoma)
ASB for transcription factors
SSXT_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSXT_HUMAN 2.36 -2.38 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration (geographic atrophy),  neuroticism,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Muscle_Skeletal,  Spleen,  Testis,  Thyroid

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