rs10843543 chr12:29901820 T>G
- Sequence
agcaagggaaatagcgccaccttt[T/G]gttgcggctgttttaagctatctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) WA09 (embryonic stem cells) neural progenitors IPSC-derived bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.00 | 0.30 | 1.45 | -2.81 | Concordant | |||
| STAG1_HUMAN | 3.89 | -0.73 | 1.28 | n/a | n/a | |||
| RAD21_HUMAN | 1.99 | -0.92 | 1.88 | n/a | n/a |
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Motif analysis
