rs10846838 chr12:125167680 A>G

Sequence
tgtcagacgacgaagcctgcagct[A/G]gtccatatacaccatctgctattg
ASB in cell types
SU-DHL-2 (anaplastic large cell lymphoma)
ASB for transcription factors
ITF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ITF2_HUMAN n/a 2.69 1.004.0·10-3 2.00 4.19 Concordant
Items per page:
1 – 1 of 1

Motif analysis

ITF2_HUMAN Concordant
ITF2_HUMAN pic

Genetic associations

GRASP eye color,  parkinsons disease,  premature ovarian failure,  total cholesterol
GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid

Download