rs10847289 chr12:127154663 C>T

Sequence
ttcaaagcctccttcacatccccc[C/T]cttatgtctccctaccttaatcca
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NFIC_HUMAN TR150_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFIC_HUMAN n/a 2.58 1.006.7·10-3 2.00 n/a No Hit
TR150_HUMAN n/a 3.48 1.000.01 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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