rs10849675 chr12:119602859 G>A

Sequence
tggggatagagataaaacaagatt[G/A]gccactaatgcatgacagtggaag
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
OSR2_HUMAN FEZF1_HUMAN GLIS1_HUMAN PRDM4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OSR2_HUMAN n/a 3.11 1.002.3·10-6 2.00 n/a No Hit
FEZF1_HUMAN n/a 2.52 1.007.6·10-4 2.00 n/a No Hit
GLIS1_HUMAN -5.22 3.04 1.003.7·10-3 2.00 n/a No Hit
PRDM4_HUMAN -4.75 2.65 1.000.04 2.00 n/a No Hit
ZN580_HUMAN -5.17 2.99 1.000.05 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  diastolic blood pressure (dbp),  eye color,  hdl cholesterol change with statins,  height,  parkinsons disease,  variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Thyroid,  Whole_Blood

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