rs10849860 chr12:121230451 T>C
- Sequence
gtcagcggtgctttgggctgcact[T/C]gcctccccctagtggtgacgtgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma) K562 (myelogenous leukemia) FT282 (normal human fallopian tube tissue)
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN KAISO_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 0.51 | 1.46 | -0.08 | Weak Concordant | |||
| IKZF2_HUMAN | 2.02 | -1.24 | 1.00 | n/a | n/a | |||
| KAISO_HUMAN | 0.13 | 2.61 | 1.50 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.24 | -0.70 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | 0.89 | 0.66 | 1.11 | n/a | n/a |
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Motif analysis
