rs10852948 chr17:38492262 A>G
- Sequence
ccgccttctggtgtgcacacggat[A/G]tcattatgaatcgtagattttcca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) neural cell GM02610 (Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN ZN143_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.78 | 0.82 | 1.88 | n/a | No Hit | |||
| STAG1_HUMAN | 2.11 | -1.28 | 3.90 | n/a | n/a | |||
| RAD21_HUMAN | 1.40 | 0.25 | 1.90 | n/a | n/a | |||
| ZN143_HUMAN | 3.18 | -0.06 | 1.25 | n/a | No Hit | |||
| SMC3_HUMAN | 1.80 | 0.13 | 1.79 | n/a | n/a |
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