rs10853147 chr17:27472242 C>T

Sequence
tagatttggggacattgtgctcct[C/T]atgggtttcttcccgtaggatggg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
ASB for transcription factors
ZBT21_HUMAN IKZF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT21_HUMAN -2.67 2.91 1.005.0·10-3 1.00 n/a n/a
IKZF1_HUMAN -0.29 1.87 1.000.04 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd autism hdl cholesterol simpson-angus scale total cholesterol
GTEx eQTL Esophagus_Mucosa Lung Testis Whole_Blood

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