rs10853783 chr19:47289867 T>C
- Sequence
aaactgatacggtacactggtggg[T/C]gtgtcttatggaaaactgcttttg
- ASB in cell types
- liver HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SP1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | 1.72 | -2.99 | 1.50 | 4.68 | Discordant | |||
| ANDR_HUMAN | 1.44 | -0.16 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood