rs10853805 chr19:49036836 A>C
- Sequence
tggacgcggcacgggaacctggcc[A/C]gagtcagcggacccaattggctgc
- ASB in cell types
- K562 (myelogenous leukemia) gastrocnemius medialis 22RV1 (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN KDM1A_HUMAN CREB1_HUMAN CTBP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.00 | -0.68 | 1.55 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.47 | n/a | 3.00 | n/a | n/a | |||
| CREB1_HUMAN | 2.74 | -0.20 | 2.00 | n/a | No Hit | |||
| CTBP1_HUMAN | 2.24 | n/a | 2.00 | n/a | n/a | |||
| ATF1_HUMAN | 1.60 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, ldl cholesterol, total cholesterol, triglycerides change with statins, urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid