rs10857485 chr10:49408699 G>A
- Sequence
tggtccccatggctacccccagcc[G/A]gactcccctccaccaggagagttc
- ASB in cell types
- GM19099 (female B-cells Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) MCF10AT1 (breast premetastatic epithelial cells) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.23 | 2.41 | 1.54 | -3.07 | Discordant | |||
| RFX1_HUMAN | n/a | 2.44 | 2.75 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
