rs10859493 chr12:93467395 T>A
- Sequence
cgcttccccaactaaaggtaaaag[T/A]ccatagcaacaatcctccctttct
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MNT_HUMAN RFX1_HUMAN ANDR_HUMAN OLIG2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.47 | -1.85 | 1.17 | n/a | No Hit | |||
| RFX1_HUMAN | 2.76 | -2.50 | 1.00 | 1.51 | Weak Discordant | |||
| ANDR_HUMAN | 2.82 | -5.34 | 2.00 | n/a | No Hit | |||
| OLIG2_HUMAN | -0.72 | 1.96 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood