rs10859508 chr12:93525665 A>G

Sequence
caaaatcccaatacatgcagtaat[A/G]aagatgattaatataatcttacat
ASB in cell types
GM19240 (B cells Lymphoblastoid Cell Lines) GM17942 (lymphoblastoid cell)
ASB for transcription factors
CTCF_HUMAN REST_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.86 0.60 2.6·10-31.00 1.28 n/a No Hit
REST_HUMAN -1.94 2.89 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP diastolic blood pressure (dbp),  paternal transmission distortion,  plasma aldosterone concentration,  transmission distortion
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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