rs10859871 chr12:95318100 A>C

Sequence
aactattcagctcatttctttgga[A/C]tcactcccccatgccgccatcctc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.37 0.38 2.8·10-101.00 2.11 n/a No Hit
ESR1_HUMAN 1.21 0.19 7.4·10-41.00 2.26 n/a No Hit
FOXA2_HUMAN 0.56 1.55 1.000.02 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI endometriosis
GRASP cystatin c in serum,  endometriosis,  endometriosis (stage iii or iv disease),  refractive error
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Thyroid

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