rs10861369 chr12:105276559 C>T

Sequence
atggcaacttccctccctcaggtt[C/T]cttctacccaggcacctccctccc
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) monocytes from periferal blood
ASB for transcription factors
SPI1_HUMAN SRBP2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.26 0.82 9.5·10-51.00 1.43 n/a No Hit
SRBP2_HUMAN 2.21 -1.25 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP eye color,  homa-b,  hypertension (early onset hypertension),  ldl cholesterol change with statins,  premature ovarian failure,  primary rhegmatogenous retinal detachment,  schizophrenia,  tardive dyskinesia,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis

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