rs10863779 chr1:209657262 G>A
- Sequence
ggctctgactaaggacaggagcac[G/A]ccaggaggcgtggacagaaggtga
- ASB in cell types
- Detroit 562 (Pharyngeal squamous cell carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) SUM149PT (Inflammatory breast carcinoma) primary human epidermal keratinocytes
- ASB for transcription factors
- TF65_HUMAN TLE3_HUMAN ESR2_HUMAN CDN1B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.25 | -0.60 | 2.08 | n/a | No Hit | |||
| TLE3_HUMAN | 2.21 | -0.86 | 2.00 | n/a | n/a | |||
| ESR2_HUMAN | -0.58 | 1.72 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 1.18 | 0.24 | 1.62 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic