rs10865505 chr2:28621356 A>G
- Sequence
ctccacctcctgcccagcaggtca[A/G]acgtgcagggtggctctcagcacc
- ASB in cell types
- 22RV1 (prostate carcinoma) iPS-derived chondrocytes
- ASB for transcription factors
- RARA_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.89 | 0.80 | 1.00 | 0.86 | Weak Discordant | |||
| ANDR_HUMAN | 2.76 | -0.39 | 2.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, homa-ir, salmonella-induced pyroptosis, triglycerides, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Lung, Nerve_Tibial, Spleen, Whole_Blood