rs10869475 chr9:75028638 A>G

Sequence
cgcggccgcgtgggtgggacttaa[A/G]agccggcgagtgccggattgttga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
ASB for transcription factors
RBM25_HUMAN TYY1_HUMAN TBX21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN -1.62 2.08 1.001.2·10-3 1.00 n/a n/a
TYY1_HUMAN -0.17 1.58 1.001.8·10-3 1.00 n/a No Hit
TBX21_HUMAN -0.13 1.63 1.004.8·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  ldl cholesterol change with statins,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pancreas,  Whole_Blood

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