rs10873299 chr14:76960368 A>G

Sequence
gtgtagggtgtattagtgaggaga[A/G]catggagggaggaactcaccagga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN 2.08 -0.95 6.8·10-51.00 1.00 n/a n/a
IKZF1_HUMAN 2.11 -2.25 1.7·10-41.00 1.25 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI atrial fibrillation
GRASP infant head circumference,  ldl cholesterol,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Prostate,  Uterus,  Vagina

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