rs10876228 chr12:52023778 C>T
- Sequence
gcctcgaaccccagcctgccgagc[C/T]gctcctcacagggtgctgtggctc
- ASB in cell types
- K562 (myelogenous leukemia) H929 (plasma cell myeloma) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN ZN610_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.66 | 0.81 | 1.27 | n/a | No Hit | |||
| ZN610_HUMAN | 2.69 | n/a | 2.00 | -1.66 | Weak Concordant | |||
| SMCA4_HUMAN | n/a | 2.55 | 1.67 | n/a | n/a |
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Motif analysis
