rs10909825 chr1:3900696 C>T
- Sequence
tgaggggctcttcccttgaagcct[C/T]tttggccaccatgtttgagagggg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) CD14+ monocytes K562 (myelogenous leukemia)
- ASB for transcription factors
- TF65_HUMAN STAT1_HUMAN SPI1_HUMAN TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 3.08 | -3.07 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.58 | n/a | 3.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.10 | 0.07 | 1.09 | n/a | No Hit | |||
| TCF21_HUMAN | 2.18 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), college completion, rheumatoid arthritis, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood