rs10910420 chr1:234373513 G>C
- Sequence
agagtccgcggtttcgccgcgtga[G/C]ttgctttttgcggctggggaggtc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) HL-60 (acute myeloid leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD51_HUMAN TYY1_HUMAN INT13_HUMAN RBM25_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | 0.85 | 3.04 | 3.00 | n/a | n/a | |||
| TYY1_HUMAN | 0.20 | 1.76 | 1.91 | n/a | No Hit | |||
| INT13_HUMAN | 0.41 | 2.42 | 1.00 | n/a | n/a | |||
| RBM25_HUMAN | 0.15 | 2.45 | 2.00 | n/a | n/a | |||
| ZBTB6_HUMAN | n/a | 3.09 | 3.00 | n/a | No Hit |
Items per page:
1 – 5 of 7
Motif analysis
Genetic associations
GRASP diastolic blood pressure (dbp), ldl cholesterol, systolic blood pressure (sbp), total cholesterol, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood