rs10915962 chr1:226223616 C>T
- Sequence
gatcgcaccgccccgccttcccag[C/T]ccctggcccgggagggtataagtg
- ASB in cell types
- definitive endoderm from HUES8 HEK293T (embryonic kidney)
- ASB for transcription factors
- SMAD2_HUMAN SP5_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD2_HUMAN | -0.57 | 2.13 | 1.17 | n/a | No Hit | |||
| SP5_HUMAN | n/a | 2.59 | 1.00 | -1.13 | Weak Discordant | |||
| ZFX_HUMAN | -1.66 | 2.21 | 2.25 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood