rs10916598 chr1:223707857 G>A
- Sequence
gctaaaatgacttaggagggaaat[G/A]acctccacctgcctgggaggagtc
- ASB in cell types
- K562 (myelogenous leukemia) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) breast tumor L1236 (Hodgkin lymphoma)
- ASB for transcription factors
- ESR1_HUMAN NFKB2_HUMAN CDN1B_HUMAN CTBP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.01 | -0.32 | 2.40 | -4.01 | Concordant | |||
| NFKB2_HUMAN | n/a | 2.67 | 1.00 | 1.51 | Weak Concordant | |||
| CDN1B_HUMAN | 1.59 | -0.32 | 1.25 | n/a | n/a | |||
| CTBP1_HUMAN | 3.05 | n/a | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg