rs10924756 chr1:246503580 G>A
- Sequence
tgtgctgcactcaccaaagcaaac[G/A]ggaaatacacataactcataccca
- ASB in cell types
- LNCaP (prostate carcinoma) BEAS-2B (bronchial epithelium) LNCaP95 LN95(Prostate adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN GCR_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.06 | 2.77 | 1.62 | 4.74 | Concordant | |||
| FOXA1_HUMAN | -0.71 | 3.09 | 1.62 | 5.78 | Concordant | |||
| GCR_HUMAN | n/a | 3.35 | 1.25 | n/a | No Hit | |||
| HXB13_HUMAN | -0.98 | 2.73 | 1.50 | n/a | No Hit | |||
| STAT3_HUMAN | 3.08 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Minor_Salivary_Gland, Pituitary, Prostate, Testis