rs11025543 chr11:20387412 C>A
- Sequence
gcctgccgcaacccaaggaggaga[C/A]aaaagtcatcttccgggctgcaac
- ASB in cell types
- HEK293 (embryonic kidney) CD34+ hematopoietic stem cells HEK293T (embryonic kidney) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- ZN362_HUMAN TIF1B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN362_HUMAN | -3.11 | 3.49 | 1.00 | 2.31 | Concordant | |||
| TIF1B_HUMAN | 2.63 | 0.45 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Uterus, Whole_Blood