rs11072703 chr15:77944587 A>G

Sequence
cgcaccaggaagccagggcccggg[A/G]atttctttttccggtccgacaggg
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
ASB for transcription factors
GABP1_HUMAN ETV5_HUMAN ELF3_HUMAN NR2C1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN n/a 1.87 1.001.2·10-12 2.00 n/a n/a
ETV5_HUMAN 4.17 -3.96 4.6·10-101.00 1.00 n/a No Hit
ELF3_HUMAN 4.03 -4.17 7.1·10-81.00 1.00 n/a No Hit
NR2C1_HUMAN n/a 2.12 1.001.7·10-6 2.00 n/a No Hit
THA11_HUMAN 3.23 -3.10 7.7·10-51.00 1.00 n/a n/a
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Motif analysis

TEAD3_HUMAN Concordant
TEAD3_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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