rs111064308 chr17:74514468 A>G
- Sequence
atatcatgggtgatgtcatgtgac[A/G]ggtgatcatgtgacaggtgatcat
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- RAD51_HUMAN MTG8R_HUMAN ATF1_HUMAN MITF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | 1.52 | n/a | 3.00 | n/a | n/a | |||
| MTG8R_HUMAN | 1.58 | n/a | 2.50 | n/a | n/a | |||
| ATF1_HUMAN | 3.20 | n/a | 2.00 | 0.38 | Weak Discordant | |||
| MITF_HUMAN | 1.75 | -0.73 | 2.25 | -0.97 | Weak Concordant | |||
| ATF3_HUMAN | 1.74 | n/a | 2.00 | -0.22 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood