rs11107405 chr12:94102348 C>T
- Sequence
aaacaatgggtggggatcgtctaa[C/T]cagctcccttccctagaagggcgg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDA-MB-231 (breast adenocarcinoma) IMR90 (lung fibroblasts) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN GATA1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 0.59 | 1.30 | n/a | No Hit | |||
| BRD4_HUMAN | 0.28 | 2.04 | 1.00 | n/a | n/a | |||
| GATA1_HUMAN | n/a | 2.33 | 2.00 | 4.47 | Concordant |
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Motif analysis
