rs11112410 chr12:105205952 C>T

Sequence
tcagaagacacagaaagactttat[C/T]gctctatttaagtatcacttccaa
ASB in cell types
22RV1 (prostate carcinoma) Peyer's patch
ASB for transcription factors
ANDR_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.08 -5.59 3.7·10-31.00 2.00 n/a No Hit
CTCF_HUMAN -0.55 1.60 1.006.4·10-3 1.90 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  ldl cholesterol change with statins,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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