rs11113466 chr12:107761160 C>G
- Sequence
gcggcgcgtttccggatcctcagc[C/G]actctcagcgcccgccgctccgcc
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- BRD2_HUMAN BRD4_HUMAN JUN_HUMAN INT11_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 0.28 | 1.00 | 1.05 | n/a | n/a | |||
| BRD4_HUMAN | 0.47 | 1.14 | 1.38 | n/a | n/a | |||
| JUN_HUMAN | 0.99 | 1.26 | 1.11 | n/a | No Hit | |||
| INT11_HUMAN | 0.10 | 1.20 | 1.67 | n/a | n/a | |||
| TBP_HUMAN | 0.97 | 1.62 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood