rs11114041 chr12:108730353 C>G
- Sequence
tttgaacactcccaaaaaaggatg[C/G]cagggccagcgcctccctccaaga
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) GBM39 (Human brain tumor)
- ASB for transcription factors
- SPI1_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.68 | 0.34 | 1.37 | -1.00 | Weak Concordant | |||
| SPT5H_HUMAN | -1.62 | 2.55 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Nerve_Tibial, Pancreas, Testis, Whole_Blood