rs11118121 chr1:218546413 T>C
- Sequence
gaagaaaaggctgattgagaagta[T/C]aggttgttttgtagtctatggtaa
- ASB in cell types
- foreskin keratinocyte MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.53 | 0.04 | 2.50 | n/a | No Hit | |||
| RAD21_HUMAN | 1.71 | -1.11 | 2.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease (age of onset), childhood acute lymphoblastic leukemia, cystatin c in serum, lp-pla2 mass