rs11118229 chr1:219159955 C>T

Sequence
atgcctgctgaaatgtccaatgtc[C/T]tagtcttctatctggaataagatt
ASB in cell types
CHL-1 (Melanoma)
ASB for transcription factors
BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 0.58 2.00 1.000.03 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  hdl cholesterol,  obesity (body mass index (bmi)),  triglycerides
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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