rs11118601 chr1:220775488 C>T

Sequence
tgattttgtgtttagggaagaccc[C/T]ggaatctttttctctacctattta
ASB in cell types
HeLa S3 (cervical adenocarcinoma) adrenal gland glioblastoma cells epidermal keratinocytes
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.78 0.89 1.000.01 1.31 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  ldl cholesterol,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Whole_Blood

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