rs11120769 chr1:207363500 T>G

Sequence
tgatcaagaacacccactttagat[T/G]tcatgtgaagaagaaataaacttc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MTG16_HUMAN SOX6_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTG16_HUMAN n/a 3.36 1.002.1·10-4 3.00 n/a n/a
SOX6_HUMAN n/a 2.76 1.000.03 3.00 n/a No Hit
ARI1B_HUMAN n/a 1.33 1.000.04 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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