rs11121232 chr1:8790650 C>A
- Sequence
caggctgcagtgtagtagcacgat[C/A]tcagatcactgcaatctccacctc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARI1B_HUMAN MTG16_HUMAN HTF4_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | n/a | 2.34 | 1.00 | n/a | n/a | |||
| MTG16_HUMAN | n/a | 1.71 | 1.50 | n/a | n/a | |||
| HTF4_HUMAN | -0.24 | 2.57 | 1.25 | n/a | No Hit | |||
| SMCA4_HUMAN | -1.49 | 2.03 | 1.00 | n/a | n/a | |||
| REQU_HUMAN | -1.41 | 2.40 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood