rs11122104 chr1:5893285 C>T

Sequence
acagctgggcccaggggaccacta[C/T]caccaatgcgcagagaccggtagt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NCOR1_HUMAN RING2_HUMAN ATF3_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOR1_HUMAN n/a 3.21 1.008.8·10-5 1.50 n/a n/a
RING2_HUMAN n/a 3.42 1.006.4·10-4 1.50 n/a n/a
ATF3_HUMAN -3.62 2.33 1.009.4·10-3 1.33 n/a No Hit
KDM1A_HUMAN -1.34 1.87 1.000.04 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  hdl cholesterol,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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