rs11123160 chr2:113078588 A>T

Sequence
ccacccaggggctaccggaaaacc[A/T]tttataagttgttcaggaagcaaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
ASB for transcription factors
ESR1_HUMAN CTCF_HUMAN ELF1_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.04 1.03 2.9·10-41.00 1.96 n/a No Hit
CTCF_HUMAN -0.31 1.93 0.981.8·10-3 2.20 n/a No Hit
ELF1_HUMAN 2.58 -2.24 3.0·10-31.00 1.00 n/a No Hit
FOXA1_HUMAN 1.19 -0.26 9.5·10-31.00 1.47 n/a No Hit
RFX5_HUMAN 1.59 -1.41 0.041.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Colon_Transverse,  Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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