rs11123512 chr2:119290961 G>A
- Sequence
tttcagctatcagacgccaaggct[G/A]acttacagggggacaaacctattg
- ASB in cell types
- A549 (lung carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines) GM12890 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.07 | 0.05 | 1.80 | n/a | No Hit | |||
| STAG1_HUMAN | 2.63 | -2.16 | 2.80 | n/a | n/a | |||
| RAD21_HUMAN | 1.18 | 0.18 | 1.83 | n/a | n/a | |||
| SMC3_HUMAN | 1.38 | -0.07 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, birth weight, college completion, ldl cholesterol, ldl cholesterol change with statins, microalbuminuria, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood