rs11125109 chr2:23563999 T>C
- Sequence
cccagtagggccagccgctggacc[T/C]gctggccacatctggcaggcgctc
- ASB in cell types
- BEAS-2B (bronchial epithelium) brain prefrontal cortex region tissues
- ASB for transcription factors
- GCR_HUMAN CTCF_HUMAN OLIG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.66 | -0.03 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.05 | 0.21 | 1.16 | -1.86 | Weak Concordant | |||
| OLIG2_HUMAN | -0.31 | 0.94 | 1.00 | -1.14 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid