rs11126332 chr2:71461006 G>A
- Sequence
aatatccaaaagtccctctagggg[G/A]cagtactatcccctttgagaacca
- ASB in cell types
- GM18951 (B-cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.87 | 0.31 | 1.97 | -3.96 | Concordant | |||
| STAG1_HUMAN | 1.89 | -1.23 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 1.23 | -0.12 | 1.35 | n/a | n/a |
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Motif analysis
