rs11126399 chr2:73386213 G>A
- Sequence
gaaggtgaggcgggccggggaggg[G/A]tgtggagccgcggcgagttggggg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) breast tumor GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZFX_HUMAN ZN600_HUMAN JUN_HUMAN NELFA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.05 | 1.36 | 1.56 | n/a | No Hit | |||
| ZN600_HUMAN | -2.25 | 2.64 | 1.00 | n/a | n/a | |||
| JUN_HUMAN | -0.19 | 1.22 | 2.00 | n/a | No Hit | |||
| NELFA_HUMAN | -0.12 | 1.88 | 1.50 | n/a | n/a | |||
| SRBP2_HUMAN | 1.98 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP cystatin c in serum, diastolic blood pressure (dbp), fasting blood glucose, height, serum creatinine
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood