rs11129776 chr3:37987184 A>C
- Sequence
taggccccaagccctggaaacttg[A/C]tgagtgagggggtggtagatgaag
- ASB in cell types
- HepG2 (hepatoblastoma) MDA-MB-453 (breast adenocarcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SMRC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMRC2_HUMAN | -2.48 | 2.73 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, hdl cholesterol, hdl cholesterol change with statins, height, ldl cholesterol, total cholesterol
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Testis, Whole_Blood